Jessica Walter
Paramjeet S. Bagga,  Ph.D.

Genomic Databases

BACTERIA

HOME General Info Human Rodents Vertebrates Invertebrates
Plants Fungi Protists Bacteria Archaebacteria Organelles
Bordetella pertussis
The Sanger Centre is sequencing the 3.88 Mb genome of Bordetella pertussis, the causative agent of whooping cough. 
CHLAMYDIA GENOME PROJECT
The goal of the Chlamydia Genome Project is to determine the DNA sequence of the chromosome of Chlamydia trachomatis.
COLIBRI
This server is constructed around a database dedicated to the analysis of the genome of Escherichia coli: Its purpose is to collate and integrate various aspects of the genomic information from E. coli, the paradigm of Gram-negative bacteria. Colibri provides a complete data set of DNA and protein sequences derived from the paradigm strain E. coli K-12, linked to the relevant annotations and functional assignments. 
DDBJ_Escherichia coli WWW Home Page 
You are able to use the numbers and names of clones, ORFs and genes, and sequences to retrieve the data in the database. Results are represented in interactive graphics and tables.
E.coli Genome Project 
The University of Wisconsin Genome Project is a genome research center originally established to complete the sequence of the Escherichia coli K-12 genome. This site continues to maintain and update that annotated sequence.
ECDC: E.Coli Database Collection
Provides as much information as possible about the model organism Escherichia coli K12. 
ECOCYC: Encyclopedia Of E.Coli Genes And Metabolism
Describes the genome and the biochemical machinery of E.coli. EcoCyc is a literature-derived electronic reference source for E.coli biologists, and for biologists who work with related microorganisms.
EcoWeb: EcoGene Web Site
A collection of information about the genes, proteins, and intergenic regions of the E. coli K-12 genome and proteome accumulated during years of sequence analysis and literature surveys.
GENPROTEC: E.coli Genome and Proteome Database
A database dedicated to E. coli genome and proteome. It aims to provide biochemists with the most updated and consolidated information about E. coli genes and proteins resulted from both the traditional experimental research and our computational analysis. 
MICADO
Complete genome of B.subtilis, metabolic pathway, mutations, gene expressions, documentation, literature, and more.
NRSUB: Non-Redundant Bacillus subtilis Database
Access the complete genome of Bacillus subtilis
Pseudomonas aeruginosa Genome Sequencing Project
The specific aims of the project are to: completely sequence the genome of P. aeruginosa strain PAO1, make predictions about the functions of newly-identified genes and other non-coding sequences, make inferences about P. aeruginosa genetic organization and evolution, establish a knowledge base in which sequence data is linked usefully to other biological information about P. aeruginosa and other organisms. 
Streptococcus pyogenes Genome Sequencing
Shotgun-based, double stranded templates sequenced, generated from a randomly sheared library of the Streptococcus pyogenes genome, with both the universal forward and reverse pUC sequencing primers.
SUBTILIST
Its purpose is to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria. SubtiList provides a complete data set of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.
The Campylobacter jejuni Genome Website
The complete sequence of C. jejuni, the leading cause of food poisoning, is 1,641,481 bp in length (with 25 polymorphic regions) and was generated from 33,824 sequencing reads. It starts at the first base in the dnaA gene, close to the origin of replication. 
The Haemophilus influenzae Genome Database
The Haemophilus influenzae Rd genome is the first genome of a free-living organism to be completed. Offers access to the latest versions of the sequence data and related annotation. 
The Mycoplasma genitalium Genome Database
The Mycoplasma genitalium genome is the first genome of a gram positive-like bacterium to be completed. Offers access to the latest versions of the sequence data and related annotation.
The Mycoplasma pneumoniae Genome Project
Based on a complete cosmid/plasmid library of the M. pneumoniae genome. 
TIGR Microbial Database
A listing of microbial genomes and chromosomes completed and in progress.
TIGR_Bordetella pertussis Genome Database
offers access to the latest versions of the sequence data and related annotation. 
Yersinia pestis Genome Project
The Sanger Centre is sequencing the genome of Yersinia pestis, the causative agent of plague.
Back to the Top Bioinformatics Resources Home Contact me

HOME Bioinf. Resources Home Bioinformatics Center DB Searching Tools
Genomic DBs Taxonomic & Phylogenetic DBs Sequence Retrieval Sequence DBs
Structural DBs Specialized DBs Seq. Analysis Tools Software
Biblio. Resources Education/Research Bioinformatics Servers Misc. Resources